Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs11186064 chr10:82322777 C/A 1.78E-6 487 31.3 27.45 20.18 KM Plot
PRAD rs11186102 chr10:82331567 C/T 1.86E-6 485 31.35 27.5 20.18 KM Plot
PRAD rs11186128 chr10:82335498 T/G 9.55E-5 489 31.87 28.72 20.18 KM Plot
PRAD rs11186135 chr10:82337214 G/C 1.59E-6 490 31.4 27.5 20.18 KM Plot
PRAD rs111883933 chr15:39000104 C/CTTTTATA 3.4E-5 486 29.17 29.23 31.42 KM Plot
PRAD rs11189306 chr10:99404086 C/T 5.49E-6 490 31.32 29.13 24.67 KM Plot
PRAD rs11189310 chr10:99412677 A/G 3.05E-9 494 31.27 29.28 24.67 KM Plot
PRAD rs11189311 chr10:99414917 A/G 3.79E-9 486 31.37 29.28 24.67 KM Plot
PRAD rs11189315 chr10:99428208 G/A 2.01E-8 482 31.27 29.4 25.52 KM Plot
PRAD rs11189318 chr10:99430906 A/G 4.73E-9 485 31.4 29.15 24.67 KM Plot
PRAD rs111893708 chr4:185167114 A/C 2.47E-11 491 31.65 28.1 20.93 KM Plot
PRAD rs111904106 chr7:6774038 A/AT 2.49E-5 484 31 31.13 42.42 KM Plot
PRAD rs111950417 chr11:129944903 T/C 1.18E-5 492 30.93 32.22 22.67 KM Plot
PRAD rs111975852 chr4:187812147 A/G 2.17E-6 480 31.18 28.57 26.8 KM Plot
PRAD rs111981370 chr6:43255380 G/T 1.32E-7 479 32.13 28.07 23.2 KM Plot